Contents:
Getting Started
YiiP Protein Example
Walkthrough
API Documentation
Performance Considerations
ZarrMD specification
Benchmarks
zarrtraj
Index
Index
A
|
C
|
D
|
F
|
G
|
H
|
I
|
M
|
N
|
O
|
P
|
R
|
S
|
T
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U
|
W
|
Z
A
add_auxiliary() (zarrtraj.ZARR.ZARRH5MDReader method)
add_transformations() (zarrtraj.ZARR.ZARRH5MDReader method)
aux_list (zarrtraj.ZARR.ZARRH5MDReader property)
C
check_slice_indices() (zarrtraj.ZARR.ZARRH5MDReader method)
close() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_dimensions_to_unitcell() (zarrtraj.ZARR.ZARRMDWriter method)
convert_forces_from_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_forces_to_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_pos_from_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_pos_to_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_time_from_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_time_to_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_velocities_from_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
convert_velocities_to_native() (zarrtraj.ZARR.ZARRH5MDReader method)
(zarrtraj.ZARR.ZARRMDWriter method)
copy() (zarrtraj.ZARR.ZARRH5MDReader method)
D
data_blacklist (zarrtraj.ZARR.ZARRMDWriter attribute)
dt (zarrtraj.ZARR.ZARRH5MDReader property)
F
frame (zarrtraj.ZARR.ZARRH5MDReader property)
G
get_aux_attribute() (zarrtraj.ZARR.ZARRH5MDReader method)
get_aux_descriptions() (zarrtraj.ZARR.ZARRH5MDReader method)
H
H5MD_VERSION (zarrtraj.ZARR.ZARRMDWriter attribute)
has_valid_coordinates() (zarrtraj.ZARR.ZARRMDWriter method)
I
iter_as_aux() (zarrtraj.ZARR.ZARRH5MDReader method)
iter_auxiliary() (zarrtraj.ZARR.ZARRH5MDReader method)
M
module
zarrtraj.ZARR
N
n_frames (zarrtraj.ZARR.ZARRH5MDReader property)
next() (zarrtraj.ZARR.ZARRH5MDReader method)
next_as_aux() (zarrtraj.ZARR.ZARRH5MDReader method)
O
OtherWriter() (zarrtraj.ZARR.ZARRH5MDReader method)
P
parse_n_atoms() (zarrtraj.ZARR.ZARRH5MDReader static method)
R
remove_auxiliary() (zarrtraj.ZARR.ZARRH5MDReader method)
rename_aux() (zarrtraj.ZARR.ZARRH5MDReader method)
rewind() (zarrtraj.ZARR.ZARRH5MDReader method)
S
set_aux_attribute() (zarrtraj.ZARR.ZARRH5MDReader method)
T
time (zarrtraj.ZARR.ZARRH5MDReader property)
timeseries() (zarrtraj.ZARR.ZARRH5MDReader method)
totaltime (zarrtraj.ZARR.ZARRH5MDReader property)
transformations (zarrtraj.ZARR.ZARRH5MDReader property)
U
units (zarrtraj.ZARR.ZARRH5MDReader attribute)
(zarrtraj.ZARR.ZARRMDWriter attribute)
W
write() (zarrtraj.ZARR.ZARRMDWriter method)
Writer() (zarrtraj.ZARR.ZARRH5MDReader method)
Z
ZARRH5MDReader (class in zarrtraj.ZARR)
ZARRMDWriter (class in zarrtraj.ZARR)
zarrtraj.ZARR
module